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RFdiffusion3

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RFdiffusion3 / utils

Commit History

Mar 6

09:52
integrate download zip logic inside generation_with_input_config, remove gr.update Running

gabboud

4a67952

Mar 4

13:00
Revert "call rfd3 with process.Popen to allow cancellation" and do not pass subprocess to go back to working version⁠

gabboud

b041365
12:34
do not pass subprocess object to gradio State

gabboud

fd78873
12:27
call rfd3 with process.Popen to allow cancellation

gabboud

f8364c2
10:20
simplify status update string by integrating in generate, create stop button

gabboud

e165b97
09:37
reset dynamic duration, bring back to 1 hour

gabboud

19021e5
09:22
test duration above 2 hours

gabboud

564b858

Mar 3

14:37
same

gabboud

50f1940
14:26
try dynamically building the correct decorator

gabboud

aa9564f
14:10
limit at 6120 sec to test GPU quota reached bug

gabboud

fd9dd17
14:01
duration 960 second

gabboud

a0b0276
13:53
limit at 3600s

gabboud

c495186
13:42
raise limit to 7199 seconds

gabboud

9cb2435
13:38
raising limit beyond 2 hours

gabboud

5f4e028
13:14
raise GPU time limit

gabboud

878f1e5

Feb 24

17:29
reference LigandMPNN space

gabboud

2e76a9e

Feb 23

21:00
fix gr update of subprocess error message

gabboud

1601881
20:47
propagate rfd3 subprocess stderr to run status textbox

gabboud

d848ff0
15:47
fix and simplify logic

gabboud

79a965a
15:40
fix config/scaffold logic

gabboud

12aac99
15:21
remove redundant buttons and state handling, get random hash for output directory

gabboud

44157d7
14:27
increase maximum nb designs per batch

gabboud

c740574
13:13
refunnel rfd3 cli output to stdout

gabboud

d40ca0d
12:36
change layout for number of batches and designs

gabboud

db73d77
12:09
time rfd3 execution

gabboud

2535c77
11:01
reduce GPU time to 240s

gabboud

4e40dbe

Feb 22

17:40
fix shared dir creation

gabboud

bcc516a
17:27
try to fix files not in the same dir problem

gabboud

37b5de1
17:04
support pdb input

gabboud

e4ccd50
16:57
misc

gabboud

eaf76e5
16:43
add support for extra args for rfdiffusion3

gabboud

b212ae4
16:20
ibid

gabboud

a76c148
16:15
fix extraction of deisgn number

gabboud

833a14a
16:01
fix results dict in new pipeline, remove double tab logic for config

gabboud

b8f3849
14:39
fix how number of abtches and designs is passed to rfd3 CLI

gabboud

17127b6
14:05
set spaces.GPU for new pipeline

gabboud

e479fab
13:58
fix event chain continuity so File component gives the filepath

gabboud

c1a83a3
13:28
remove deprecated gr.File.name attribute

gabboud

f6a67e4
13:16
unconditional generation with input file pipeline

gabboud

7f14dfe
11:21
modularize event handling

gabboud

8649d5a
11:12
fix nested list error in gradio click function

gabboud

a7294d8
11:02
modularize event handling

gabboud

61771f6

Feb 17

08:44
fix main run button logic

gabboud

89389c9

Feb 16

18:46
replace pdb with pdb_path var

gabboud

22a41b0
18:37
rename results fields, modularize event handling

gabboud

46eb3c3
18:07
remove 3d visualization

gabboud

743042b
16:31
fix interface of Molecule3D after testing

gabboud

5d306a8
14:21
mcif to pdb conversion with gemmi

gabboud

c49e7b8
13:51
fix path

gabboud

8705e46
13:28
change results to list

gabboud

464a533

Commit History

Mar 6

integrate download zip logic inside generation_with_input_config, remove gr.update Running

Mar 4

Revert "call rfd3 with process.Popen to allow cancellation" and do not pass subprocess to go back to working version⁠

do not pass subprocess object to gradio State

call rfd3 with process.Popen to allow cancellation

simplify status update string by integrating in generate, create stop button

reset dynamic duration, bring back to 1 hour

test duration above 2 hours

Mar 3

same

try dynamically building the correct decorator

limit at 6120 sec to test GPU quota reached bug

duration 960 second

limit at 3600s

raise limit to 7199 seconds

raising limit beyond 2 hours

raise GPU time limit

Feb 24

reference LigandMPNN space

Feb 23

fix gr update of subprocess error message

propagate rfd3 subprocess stderr to run status textbox

fix and simplify logic

fix config/scaffold logic

remove redundant buttons and state handling, get random hash for output directory

increase maximum nb designs per batch

refunnel rfd3 cli output to stdout

change layout for number of batches and designs

time rfd3 execution

reduce GPU time to 240s

Feb 22

fix shared dir creation

try to fix files not in the same dir problem

support pdb input

misc

add support for extra args for rfdiffusion3

ibid

fix extraction of deisgn number

fix results dict in new pipeline, remove double tab logic for config

fix how number of abtches and designs is passed to rfd3 CLI

set spaces.GPU for new pipeline

fix event chain continuity so File component gives the filepath

remove deprecated gr.File.name attribute

unconditional generation with input file pipeline

modularize event handling

fix nested list error in gradio click function

modularize event handling

Feb 17

fix main run button logic

Feb 16

replace pdb with pdb_path var

rename results fields, modularize event handling

remove 3d visualization

fix interface of Molecule3D after testing

mcif to pdb conversion with gemmi

fix path

change results to list