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| 1 |
+
# Datasheet — 256³ DNS Turbulence Dataset (turbgen)
|
| 2 |
+
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| 3 |
+
Datasheet following Gebru et al. (2021). Every quantitative claim here is grounded
|
| 4 |
+
in the per-case acceptance appendices (`experiments/phase0/results/<case>/DNS_STANDARD_APPENDIX_A.md`)
|
| 5 |
+
and the production catalog; every report carries a provenance stamp
|
| 6 |
+
(git hash / date / machine / torch version) and full verification tables.
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| 7 |
+
|
| 8 |
+
---
|
| 9 |
+
|
| 10 |
+
## 1. Motivation
|
| 11 |
+
|
| 12 |
+
- **Why was this dataset created?** To provide a corpus of 3D incompressible
|
| 13 |
+
turbulence for training and benchmarking turbulence models, where every
|
| 14 |
+
configuration is verified against an objective DNS acceptance standard (resolution
|
| 15 |
+
class, A-group hard gates, and a D-group equation-level consistency check).
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| 16 |
+
- **What it adds relative to common practice.** Beyond the usual statistics
|
| 17 |
+
(spectrum, isotropy), each configuration is checked with (a) a D-group verifying
|
| 18 |
+
the field satisfies the Navier–Stokes equations to time-truncation precision, and
|
| 19 |
+
(b) high-variance statistics (e.g. A10 isotropy) reported as ensemble mean ± std
|
| 20 |
+
over an IC-ensemble (multiple initial conditions; see Uses for the honest scope of
|
| 21 |
+
"independent") rather than a single value.
|
| 22 |
+
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| 23 |
+
## 2. Composition
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| 24 |
+
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| 25 |
+
- **Solver**: GPU pseudo-spectral DNS of the incompressible Navier–Stokes equations
|
| 26 |
+
(rotational form), 256³, 2/3-rule dealiasing, Williamson RK3 + Lawson integrating
|
| 27 |
+
factor for viscosity, **fp64 compute**. Forcing for steady cases is Eswaran–Pope
|
| 28 |
+
stochastic Ornstein–Uhlenbeck (random-phase, low-band) — the only forcing that
|
| 29 |
+
avoids the metastable relaminarization of deterministic band forcing on 256³
|
| 30 |
+
(documented negative result, `NEGATIVE_RESULT_deterministic_forcing.md`).
|
| 31 |
+
|
| 32 |
+
- **Configurations**: **15 released frame-configs** spanning controlled physics axes
|
| 33 |
+
(pure-ν Re, forcing-band k_f, correlation-time τ, rotation, passive scalar, stratification,
|
| 34 |
+
helicity, free decay), plus boundary/validation anchors (NOT released as corpus). All 256³, fp64.
|
| 35 |
+
The authoritative config list is `experiments/phase0/make_splits.py::CONFIGS`.
|
| 36 |
+
|
| 37 |
+
**Released frame-configs (15):**
|
| 38 |
+
|
| 39 |
+
| # | name | axis / type | Re_λ | class | verdict |
|
| 40 |
+
|---|---|---|---|---|---|
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| 41 |
+
| #1 | ou_relam90 | Re axis (k_f=2, τ=2 anchor) | 86 | I | A+D all-green (14 seeds) |
|
| 42 |
+
| #2 | ou_relam70 | Re axis | 70 | I | A+D all-green (dt=0.05: 16 seeds/2416 fr, A10 cross 1.43%) |
|
| 43 |
+
| Re50 | ou_relam50 | Re axis (low end, meas. 54.8) | 55 | I | A+D all-green (14 seeds) |
|
| 44 |
+
| kf3 | ou_robust_kf3 | k_f axis (k_f=3) | 73 | I | A+D all-green (15 seeds) |
|
| 45 |
+
| kf4 | ou_robust_kf4 | k_f axis (k_f=4) | 60 | I | A+D all-green (16 seeds) |
|
| 46 |
+
| τ1 | ou_robust_tau1 | τ axis (τ=1) | 80 | I | A+D all-green (14 seeds) |
|
| 47 |
+
| #7 | helical_re86 | helicity (broken mirror symmetry) | 83 | I | A+D all-green (13 seeds) |
|
| 48 |
+
| decay_hotstart | decay_hotstart_re86 | free decay (hot start) | 86→24 | — | decay-criteria + D all-green (**8 independent trajectories, v2 2026-07-15**) |
|
| 49 |
+
| decay_saffman | decay_saffman_v2 | free decay (initial spectrum p=2) | cold start | — | decay-criteria + D all-green (8 seeds) |
|
| 50 |
+
| decay_batchelor | decay_batchelor_v2 | free decay (initial spectrum p=4) | cold start | — | decay-criteria + D all-green (8 seeds) |
|
| 51 |
+
| ABC | abc_turb_full | helical decay (Beltrami init) | 230→13 | — | decay-criteria + D all-green (8 seeds) |
|
| 52 |
+
| rot-strong | rotating_ro0p2 | rotation (Ω=2.5, frac_2D 0.95) | — | I | hard gate (res+D) pass; A10 report-only (8 seeds, cross 0.36%) |
|
| 53 |
+
| rot-moderate | rotating_ro0p2_v2 | rotation (Ω=0.81, frac_2D 0.64) | — | I | hard gate (res+D) pass; A10 report-only (8 seeds, cross 1.41%) |
|
| 54 |
+
| scalar | scalar_sc1 | passive scalar (Sc=1, 5th channel θ) | 86 | I | hard gate (res+Batchelor+D) pass; A10 report-only (8 seeds, cross 3.31%) |
|
| 55 |
+
| stratified | stratified_reb40 | stratification (Boussinesq, Re_b≈41, 5th channel b) | 86 | I | **complete**; hard gate (res+Re_b+Ozmidov+D) pass; A10 report-only (8 seeds, cross 0.42%) |
|
| 56 |
+
|
| 57 |
+
> **RESOLVED DEFECT (kept for provenance) — `decay_hotstart_re86` originally shipped 8 bit-identical
|
| 58 |
+
> copies of one trajectory** (verified 2026-07-15: `max|diff|=0.0` across all frames, shared ckpt md5,
|
| 59 |
+
> N_eff≈1.0; cause: 8 pools resumed the SAME checkpoint under different seed labels, and
|
| 60 |
+
> `corpus_to_zarr.py` counted directories). **Re-produced same day as v2: 8 genuinely independent
|
| 61 |
+
> trajectories** warm-started from 8 DISTINCT `ou_relam90` checkpoints (md5 8/8 unique, first-frame
|
| 62 |
+
> pairwise `max|diff| ≥ 2.55`, DEC-criteria 8/8 green, zarr attrs now carry
|
| 63 |
+
> `n_independent_trajectories=8`). The defective 79G corpus was deleted with explicit user
|
| 64 |
+
> authorization after v2 passed acceptance. The full record is retained in the production ledger.
|
| 65 |
+
> **All 15 configs now have machine-verified independent seeds**
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| 66 |
+
> (`benchmark/tests/test_corpus_seed_independence.py`, KNOWN_DUPLICATE exemption list now empty).
|
| 67 |
+
|
| 68 |
+
> **KNOWN LIMITATION — normalizer constants are transductively fitted.** The per-group minmax
|
| 69 |
+
> scalars in each `<CASE>_norm_minmax.json` were fitted over EVERY frame in the corpus, including
|
| 70 |
+
> val/test seeds (`corpus_to_zarr.py` never filters by seed). The leak is a single per-group global
|
| 71 |
+
> extremum — not per-sample statistics — and was measured to shift the velocity scalar by ~7% on one
|
| 72 |
+
> config. Fix requires refitting + retraining everything; judged not worth it. Papers using this
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| 73 |
+
> dataset must describe the constants as "corpus-global frozen scales", NOT "train-only".
|
| 74 |
+
|
| 75 |
+
**Boundary / validation anchors (NOT released as corpus — honest boundary evidence):**
|
| 76 |
+
|
| 77 |
+
| # | name | role | note |
|
| 78 |
+
|---|---|---|---|
|
| 79 |
+
| #4 | ou_relam100 | Class II resolution boundary | Re_λ111; A2/A4 fail (under-resolved); spectrum+low-order+D usable |
|
| 80 |
+
| #A2 | ou_relam95_classII | Class II resolution boundary | Re_λ98; A2=99.47% marginal; densifies the Class II degradation curve |
|
| 81 |
+
| ~~tau4~~ | ou_robust_tau4 | admitted at config level, **DROPPED from release** | τ=4 passed config-admission (long-trajectory 4-seed pooled: A13/13 + D-group, k_maxη=1.551 Class I; see ledger1) but was DROPPED from the released frame-set (2026-06-26): only 3/8 seeds reached uniform-100 frames, rejects all A7 stationarity. Released τ axis is 2 points {1,2}. |
|
| 82 |
+
| TG | tg_re1600 | Brachet validation anchor | deterministic symmetric decay; not corpus (half of A-group N/A); ε(t) peak matches Brachet |
|
| 83 |
+
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| 84 |
+
- **Corpus (15/15 complete, dt=0.05, 2026-07-13)**: frame-configs × independent IC-ensemble
|
| 85 |
+
seeds × **150 frames per seed** for forced/extended (decay configs span the active-decay
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| 86 |
+
window). **Frame cadence = 0.05 T_L (~1 τ_η)** (2026-07-08 dt redesign: the old 0.2 T_L
|
| 87 |
+
cadence decorrelated adjacent frames and degenerated the rollout task; 0.05 T_L makes the
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| 88 |
+
adjacent-frame change ~17%, learnable — aligns with JHTDB/The Well/APEBench). **Each seed
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| 89 |
+
carries its OWN independent OU forcing sequence** (`ou_seed = config + IC seed`), so the
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| 90 |
+
ensemble is a fully-independent ensemble — see §5. Per-config released seed/frame counts
|
| 91 |
+
(sized so the pooled A10 clears threshold; the k_f=2 high-Re cases need more seeds to beat
|
| 92 |
+
the few-mode uw floor): ou_relam90 12/2427, ou_relam70 16/2416 (A10 cross 1.427%),
|
| 93 |
+
ou_relam50 8/1200, kf4/kf3 8/1200, tau1 10/1500, helical 8/1200, rotating×2 8/1200,
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| 94 |
+
scalar 8/1089, stratified 8/1200, hotstart 8/400, decay-family per decay span. Each frame
|
| 95 |
+
is a 4-channel (u, v, w, p) fp32 field of shape [4, 256, 256, 256] (scalar/stratified add a
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| 96 |
+
5th channel θ/b). Pressure is solved by the D4-certified `operators.pressure_hat`. Each
|
| 97 |
+
frame is **instantaneously Class I** (per-frame k_maxη≥1.5 gate). Data currently split
|
| 98 |
+
across the production machines — see
|
| 99 |
+
`DATASET_MANIFEST_dt0.05.md`; merged to a single staging root at release.
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| 100 |
+
|
| 101 |
+
- **Labels / derived quantities**: each frame stores its time `t` and instantaneous
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| 102 |
+
`k_max_eta`. Per-case appendices give the full A/B/D acceptance tables.
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| 103 |
+
|
| 104 |
+
## 3. Collection process
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| 105 |
+
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| 106 |
+
- Each configuration: spin-up to statistical stationarity (or, for decay, warm-start
|
| 107 |
+
from a matured field), then a sampling window. Acceptance is computed by the audited
|
| 108 |
+
referee scripts `eval_dns_standard.py` (A/B) + `eval_dynamics_residuals.py` (D);
|
| 109 |
+
the referee scripts themselves pass known-answer target tests (`test_eval_acceptance.py`,
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| 110 |
+
including adversarial cases that must FAIL) before judging data.
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| 111 |
+
- Corpus frames come from a triple gate: per-frame (instantaneous k_maxη≥1.5),
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| 112 |
+
per-trajectory (class/A2/A12/A14/D1–D4), and multi-seed pooling (A10/A7 time-averaged
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| 113 |
+
items). Only frames from accepted trajectories enter the corpus.
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| 114 |
+
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| 115 |
+
## 4. Preprocessing / cleaning / labeling
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| 116 |
+
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| 117 |
+
- **Compute fp64, store fp32**: storing an already-accepted fp64 field as fp32 is
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| 118 |
+
verified safe (A12 incompressibility ~1e-13 after the round trip). fp32 compute is
|
| 119 |
+
NOT used (it has a structural small-scale instability).
|
| 120 |
+
- **Per-frame resolution filtering**: frames whose instantaneous k_maxη<1.5 are
|
| 121 |
+
dropped. **Consequence (declared in manifest)**: the dropped frames are the eps-peak
|
| 122 |
+
(most intermittent) instants, so the corpus systematically under-samples the
|
| 123 |
+
strong-dissipation tail; high-order intermittency statistics (derivative
|
| 124 |
+
flatness/kurtosis) are a **lower bound**, not unbiased. Mild at Re_λ≈86 (dropped eps
|
| 125 |
+
~1.3–1.4× the mean). Frames are therefore NOT uniformly spaced in time — loaders MUST
|
| 126 |
+
use each frame's stored `t`.
|
| 127 |
+
|
| 128 |
+
## 5. Uses
|
| 129 |
+
|
| 130 |
+
- **Recommended**: training/benchmarking turbulence foundation models on resolved 3D
|
| 131 |
+
incompressible turbulence; testing equation-level consistency (D-group); studying
|
| 132 |
+
forced-steady vs free-decay and non-helical vs helical regimes.
|
| 133 |
+
- **Use with care / not recommended**:
|
| 134 |
+
- Do NOT treat the corpus as an unbiased sample of extreme dissipation events (see §4).
|
| 135 |
+
- Do NOT cite the free-decay decay-rate α as a quantitative physical result: α is a
|
| 136 |
+
**report-only** item — it depends strongly on the virtual-origin t0 (a free fit
|
| 137 |
+
parameter; in-window t0 shifts move α across ~1.3–2.0 at R²>0.998) and deviates
|
| 138 |
+
from textbook Saffman/Batchelor values. The decay cases' defensible value is the
|
| 139 |
+
D-group (equation-level correctness), not α.
|
| 140 |
+
- Do NOT judge isotropy (A10) from a single realization: A10 cross-term is a
|
| 141 |
+
**high-variance** statistic (per-seed scatter ~0.7–6%); the verdict uses the
|
| 142 |
+
multi-seed **pooled** value (corpus: cross 1.92%, comp 2.27%) and is reported as
|
| 143 |
+
ensemble mean ± std (corpus per-seed cross 2.83% ± 1.39%). This pooling is the DNS
|
| 144 |
+
standard's own A9/reporting rule ("average ≥5 T_E **or** ≥8 independent ensemble
|
| 145 |
+
samples; judge on the mean, report uncertainty"; Pope 2000) — pooling reduces the
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| 146 |
+
finite-volume statistical noise of an estimate of a quantity that is ~0 by isotropy,
|
| 147 |
+
it does not "wash" an anisotropic field isotropic (a truly anisotropic field's
|
| 148 |
+
pooled value would not drop). All healthy seeds are kept (only laminarized /
|
| 149 |
+
A14-aborted runs are excluded), thresholds are unchanged, and per-seed scatter is
|
| 150 |
+
reported alongside the pooled value.
|
| 151 |
+
- **Independence of ensemble seeds**: each seed varies BOTH the initial condition
|
| 152 |
+
(`--seed`) AND the OU forcing sequence — `ou_seed = config + IC seed` gives every
|
| 153 |
+
seed its own independent stochastic forcing drive (`--ou-seed-per-ic`). So the
|
| 154 |
+
ensemble is a **fully-independent** ensemble, not merely IC-varied. This is the core
|
| 155 |
+
of the A10 fix: independent forcing randomizes the sign of the cross-correlations
|
| 156 |
+
⟨u_i u_j⟩ across seeds, so signed pooling cancels them to the isotropic value. (An
|
| 157 |
+
earlier release shared one fixed `ou_seed` across seeds; that imprinted a common
|
| 158 |
+
directional bias that signed pooling could not cancel — corrected to per-seed
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| 159 |
+
forcing.)
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| 160 |
+
- #4 (Re_λ111) is Class II: gradient/high-order statistics are N/A (under-resolved);
|
| 161 |
+
spectrum, low-order moments, and D-group are usable. It is a measured point on the
|
| 162 |
+
256³ Class I boundary: the publishable-Re ceiling (~Re_λ 86–90) is not a chosen limit
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| 163 |
+
but the objective consequence of the DNS resolution requirement — at fixed N=256 the
|
| 164 |
+
Class I red line k_maxη≥1.5 caps Re, and #4 (Re111, A2 dissipation-fraction fails) plus
|
| 165 |
+
ou_relam95 (Re98, A2 marginally fails) are where that line measurably sits. Higher Re is
|
| 166 |
+
physically reachable only as Class II (spectrum + low-order + D usable, gradients N/A).
|
| 167 |
+
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| 168 |
+
## 6. Distribution
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| 169 |
+
|
| 170 |
+
- Format: **zarr only** (lossless zstd) — `.pt` frames are an intermediate, deleted after
|
| 171 |
+
conversion + QA. `corpus/<case>/<case>.zarr` holds u[N,3,256,256,256] + p[N,256,256,256]
|
| 172 |
+
(+ θ or b as a 5th field for scalar/stratified) + t/seed/k_max_eta arrays (1 frame/chunk).
|
| 173 |
+
Storage root is the `TURBGEN_DATA_DIR` env var (not a hardcoded path), so the tooling is
|
| 174 |
+
cross-platform. Frozen JOINT-velocity normalizers in `<case>_norm_minmax.json` (maps to
|
| 175 |
+
[-1,1]) and `<case>_norm_standardize.json` (z-score, UNBOUNDED ~±5, pressure to ~−11);
|
| 176 |
+
velocity is normalized by ONE shared scale (not per-component) to preserve A10 isotropy.
|
| 177 |
+
Lossless verified bit-exact (random frame spot-checks). `seed` index orders seeds numerically.
|
| 178 |
+
- Hosting: full corpus on **Zenodo (DOI)**, core subset on **HuggingFace**; data **CC-BY-4.0**,
|
| 179 |
+
code **MIT**.
|
| 180 |
+
- License / public release: **pending user decision** (publication and public release
|
| 181 |
+
require maintainer sign-off).
|
| 182 |
+
|
| 183 |
+
### Reproducibility scope (honest)
|
| 184 |
+
- **Bit-exact regeneration requires the ORIGINAL (device, torch version).** The OU forcing's
|
| 185 |
+
random sequence is generated on-GPU; GPU RNG differs from CPU and can differ across GPU
|
| 186 |
+
architectures / torch versions. The two production machines run different torch (2.11 vs
|
| 187 |
+
2.7), so a trajectory is byte-identical only when re-run on the same hardware+torch that
|
| 188 |
+
produced it. **The released fp32 zarr is the canonical bit-exact artifact.**
|
| 189 |
+
- From the public solver + config + seed + git hash you can **regenerate the same flow
|
| 190 |
+
STATISTICS** (spectra, A/B/D-group verdicts) on any fp64-capable device — the dataset's
|
| 191 |
+
statistical properties are reproducible everywhere; per-byte identity is hardware-bound.
|
| 192 |
+
This is the standard situation for GPU-RNG DNS and is stated so reviewers reproducing on
|
| 193 |
+
different hardware expect matching statistics, not matching bytes.
|
| 194 |
+
|
| 195 |
+
## 7. Maintenance
|
| 196 |
+
|
| 197 |
+
- Two-machine generation (Windows/torch 2.11 and Linux/torch 2.7) sharing one
|
| 198 |
+
git repo; the solver is cross-machine reproduced (#1 independently reproduced on both
|
| 199 |
+
OS / torch versions, A+D all-green, consistent). Acceptance appendices carry
|
| 200 |
+
provenance stamps for traceability.
|
| 201 |
+
|
| 202 |
+
## 8. Known limitations / open items
|
| 203 |
+
|
| 204 |
+
- **Production scope:** 15 frame-configs × **8–16 IC-seeds (forced) or 8 (ext/decay)** × 150
|
| 205 |
+
frames (decay configs span the active-decay window, frozen tail excluded), zarr-only.
|
| 206 |
+
**As of 2026-07-13 production is 15/15 complete** (all forced/ext/decay accepted and on
|
| 207 |
+
disk). Per-config accepted-seed counts vary with the per-trajectory gate and the pooled-A10
|
| 208 |
+
requirement (forced k_f=2 high-Re cases pool more seeds: relam90 12, relam70 16; others 8–10
|
| 209 |
+
— see the released-frame-set table §2 and `DATASET_MANIFEST_dt0.05.md`). Data is split
|
| 210 |
+
across the production machines; merged to a single staging root at release.
|
| 211 |
+
- **Regime framing is honest, not orthogonal axes:** only the pure-ν Re axis {Re_λ 55,70,86}
|
| 212 |
+
is single-variable (the low point measured Re_λ=54.8, nominal "50"). The k_f {2,3,4} and τ {1,2} variations are physically-distinct
|
| 213 |
+
forcing regimes but are CONFOUNDED with Re (higher-k injection / longer correlation shift
|
| 214 |
+
ε → Re); the manifest records each config's MEASURED (Re_λ, k_f, τ, ε). Physical diversity
|
| 215 |
+
comes from multi-physics breadth + this measured-regime coverage, not a wide clean sweep.
|
| 216 |
+
- **Frame count after the per-frame gate:** the instantaneous k_maxη≥1.5 gate drops some
|
| 217 |
+
frames (Re86-edge configs like scalar drop ~half on the ε-peak instants); production
|
| 218 |
+
over-provisions the sampling window so enough frames survive the gate. Frame counts are
|
| 219 |
+
therefore NOT uniform across seeds (accepted as of 2026-07-04); per-seed kept counts are in
|
| 220 |
+
the manifest.
|
| 221 |
+
- **Re_λ≈55 caveat (the Re-axis low point, config `ou_relam50`):** a low-Re /
|
| 222 |
+
dissipation-dominated regime with essentially no inertial range (B-group is report-only
|
| 223 |
+
below Re_λ100); included as the Re-axis low endpoint, not as an inertial-range-physics
|
| 224 |
+
sample. Calibrated 2026-06-25: σ²=0.0555 → Re_λ=54.8, A5 L_box/L=5.35 PASS (the flagged
|
| 225 |
+
A5 risk did not materialize). Named "50" (nominal), measured 54.8.
|
| 226 |
+
- #4 D2 re-measured under the frozen protocol (2026-06-21): mean 1.04e-3 (was
|
| 227 |
+
3.96e-3 live-forcing); verdict unchanged. All D2 values now use the frozen protocol.
|